Journal Papers (ISI)

Biblio logo(12) Towards harmonization of DNA metabarcoding for monitoring marine macrobenthos: the effect of technical replicates and pooled DNA extractions on species detection
L. Van den Bulcke, A. De Backer, B. Ampe, S. Maes, J. Wittoeck, W. Waegeman, K. Hostens and S. Derycke
(2021) METABARCODING AND METAGENOMICS. 5, 233-247.
Biblio logo(11) Bacterial species identification using MALDI-TOF mass spectrometry and machine learning techniques: a large-scale benchmarking study
T. Mortier, A. Wieme, P. Vandamme and W. Waegeman
(2021) COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL. 19, 6157-6168.
Biblio logo(10) Improving the performance of machine learning models for biotechnology: the quest for deux ex machina
F. Mey, J. Clauwaert, K. Van Huffel, W. Waegeman and M. De Mey
(2021) BIOTECHNOLOGY ADVANCES. 53, 107858.
Biblio logo(9) Pressure injury prediction models for critically-ill patients should consider both the case-mix and local factors
M. Deschepper, S. Labeau, W. Waegeman and S. Blot
(2021) INTENSIVE AND CRITICAL CARE NURSING. 65, 103033.
Biblio logo(8) Explainability in transformer models for functional genomics
J. Clauwaert, G. Menschaert and W. Waegeman
(2021) BRIEFINGS IN BIOINFORMATICS. 22, 1-11.
Biblio logo(7) Predicting the presence and abundance of bacterial taxa in environmental communities through flow cytometric fingerprinting
J. Heyse, F. Schattenberg, P. Rubbens, S. Müller, W. Waegeman, N. Boon and R. Props
(2021) MSYSTEMS. 6, e00551-21.
Biblio logo(6) Ambient temperature and relative humidity-based drift correction in frequency domain electromagnetics using machine learning
D. Hanssens, E. Van De Vijver, W. Waegeman, M. E. Everett, I. Moffat, A. Sarris and P. De Smedt
(2021) NEAR SURFACE GEOPHYSICS . 19, 541-556.
Biblio logo(5) Efficient set-valued prediction in multi-class classification
T. Mortier, M. Wydmuch, K. Dembczynski, E. Hüllermeier and W. Waegeman
(2021) DATA MINING AND KNOWLEDGE DISCOVERY. 35, 1435-1469.
Biblio logo(4) Aleatoric and epistemic uncertainty in machine learning: an introduction to concepts and methods
E. Hüllermeier and W. Waegeman
(2021) MACHINE LEARNING. 110, 457-506.
Biblio logo(3) PhenoGMM: Gaussian mixture modelling of cytometry data quantifies changes in microbial community structure
P. Rubbens, R. Props, F.-M. Kerckhof, N. Boon and W. Waegeman
(2021) MSPHERE. 6, e00530-20.
Biblio logo(2) High-resolution surveying with small-loop frequency domain electromagnetic systems: Efficient survey design and adaptive processing
D. Hanssens, W. Waegeman, Y. Declercq, H. Dierckx, H. Verschelde and P. De Smedt
(2021) IEEE GEOSCIENCE AND REMOTE SENSING MAGAZINE. 9, 167-183.
Biblio logo(1) Cytometric fingerprints of gut microbiota predict Crohn's disease state
P. Rubbens, R. Props, F.-M. Kerckhof, N. Boon and W. Waegeman
(2021) THE ISME JOURNAL. 15, 354-358.